Research Areas
Gene Expression and Regulation

The regulated expression of genes is critical for all forms of life to effectively survive and thrive in their environment. Some common regulatory mechanisms are used by plants, animals, fungi, and microbes to control gene expression, but the complexity escalates from prokaryotes to eukaryotes. The study of these phenomena unites one of the largest groups of researchers in the Genetics Program at MSU.

Gene expression may change in response to physical signals from the environment, interactions between species, and signals within an organism. Regulatory mechanisms operate at many levels: through alterations in DNA (chromatin) structure, modification of transcription, stability, or translation of mRNA, or alterations in protein activity through post-translational modification. These mechanisms are studied in laboratories at MSU using state-of-the-art methodologies coupled with classical methods to more fully understand the processes of gene regulation. It is the combination of these strategies that is the strength of this group.

The approaches to study gene expression and regulation vary from the atomic level to the molecular level to the population level, and this depth of examination is reflected in the research groups composing this area of the MSU Genetics Program. Techniques of biochemistry, microbiology, molecular biology, and genomics, are used in the study of such varied areas as genetic and infectious diseases of animals (Ewart, Mansfield, Mulks), humans (Arvidson, Bagdasarian, Mansfield, Triezenberg), and plants (Allison, Howe, Sticklen, Trail, Walton); cancer (Esselman, Fluck, Kopachik, McCormick, Schwartz, Zacharewski), development (Arnosti, Champness, Kende, Kroos, vanNocker), bioremediation (Reddy, Rugh), and microbial ecology (Schmidt, Thomashow). Nutrition and improvement of crop production is a prominent area studied at all levels by a large number of researchers (Della Penna, Han, Nadler, Ohlrogge, Sticklen,). The research also encompasses basic cellular processes such as transcription (Burton, Geiger, Jump, Kuo, Thomashow, Triezenberg), post-transcriptional RNA modification (Koslowsky, Patterson), translation (Snyder), and organelle division (Osteryoung). Specialized classes and research opportunities are offered through the Gene Expression in Disease and Development focus group, composed of members of the Genetics Program whose research is concentrated on identifying basic mechanisms of transcriptional control (www.bch.msu.edu/GEDD).

FACULTY NAME

RESEARCH DESCRIPTION

Richard Allison
control of plant viral multiplication and gene expression
David Arnosti transcriptional repression and Drosophila development
Cindy Arvidson gene expression during bacterial pathogenesis
Michael Bagdasarian gene expression during bacterial pathogenesis
Robert Britton Genomics of prokaryotic chromatin remodeling factors, gene expression mechanisms in Lactobacillus sp.
Zachary Burton eukaryotic transcription mechanisms
Wendy Champness controls of gene expression during bacterial development, antibiotic production
Christina Chan Apply system biology approaches to reconstruct signaling and gene regulatory pathways to help elucidate disease mechanisms and identify pharmaceutical targets
Jose Cibelli genetic pluripotency of animals examined through nuclear transplantation and cloning
Todd Ciche gene regulation controlling symbiosis and pathogenesis of bacteria, nematodes, and their insect hosts
Dean Della Penna gene expression for cell wall synthesis and secondary metabolite production
Catherine Ernst Developmental and nutritional regulation of gene expression in animals
Walter Esselman tyrosine phosphatases in signaling, cell cycle and transformation, differentiation and activation of lymphocytes.
Susan Ewart variations in gene expression in inherited diseases of animals
David R. Foran development and gene expression of forensically useful flies
Michele Fluck polyoma virus as a model to study the interactions of a virus with its host cells, persistence and tumorigenesis
Jim Geiger structural details of eukaryotic transcription initiation
Kyung-Hwan Han plant gene expression
Sandra Haslam role of epithelial-stromal cell interactions and tissue microenvironment in normal and cancerous breast development and growth regulation
R. William Henry RNA polymerase and transcriptional control
Gregg Howe gene expression during plant-insect interactions, plant resistance mechanisms
Jianping Hu regulatory mechanisms controlling peroxisomal gene expression.
Marianne Huebner statistical issues in the design and analysis of microarray experiments; gene regulatory networks.
Donald Jump polyunsaturated fatty acids (PUFA) effects on liver gene expression via transcription factors
Hans Kende genetics of plant growth and development, as controlled by plant hormones
Will Kopachik transcriptional control of embryogenesis and tumorigenesis in the prostate
Lee Kroos regulation of gene expression during development of the soil bacteria Bacillus subtilis and Myxococcus xanthus
Donna Koslowsky RNA editing, mechanisms of regulation of mitochondrial gene expression in trypanosomes
Min-Hao Kuo gene expression and other DNA-templated nuclear activities in the context of chromatin, transcriptional activation and dynamic chromatin modifications, in particular, histone acetylation.
Robert Larkin influence of cholroplast development on nuclear gene expression
Laura McCabe transcriptional regulation of bone formation under conditions of spaceflight, limb disuse, and disease states such as diabetes and osteoporosis.
Linda Mansfield gene expression during bacterial pathogenesis
J. Justin McCormick mechanisms by which normal human cells are transformed into tumor-producing, malignant cells

Richard Miksicek

Molecular endocrinology and breast cancer; gene expression.

Beronda Montgomery-Kaguri molecular genetics of light-regulated growth and development in plants and cyanobacteria
Martha Mulks gene expression during bacterial pathogenesis, animal disease
Ken Nadler regulation of heme synthesis in the symbiotic Rhizobium­legume root nodule
John Ohlrogge regulation of fatty acid synthesis in plants
Katherine Osteryoung controls of chloroplast division
Ronald Patterson RNA splicing co-factor galectin-3.
C. A. Reddy molecular mechanisms of regulation of secondary metabolism by filamentous fungi
Clayton Rugh gene expression in phytoremediation, ability of plants to remove environmental pollutants
Thomas Schmidt gene expression in microbial ecosystems
Richard Schwartz transcriptional regulation of cytokines, differentiated function and differentiation in hejatopoietic cells; acetylation and transcription factor function
Larry Snyder EF-Tu translation factor interaction with phage T4 protein in E. coli
Mariam Sticklen controlling gene expression for improvement of cereal crops and turfgrass; plant­pathogen interactions.
Michael Thomashow molecular basis of adaptive response to low temperature and other abiotic stresses in plants and bacteria.
Frances Trail genetics of fungal development with particular emphasis on sexual reproduction, sporulation, and pathogenicity
Steven Triezenberg transcriptional activation in herpes simplex virus, transcriptional activation in plants
Bruce Uhal Lung epithelial stem cell function; regulation of epithelial cell death (apoptosis); molecular mechanisms of lung fibrogenesis and repair.
Steve vanNocker transcriptional control of flowering in Arabidopsis and corn
Jonathan Walton histone acetylation as a key regulator in fungal-plant interactions
Tim Zacharewski effects of estrogenic chemicals on gene expression, resulting in hormone-dependent cancers